Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020207.1 Corchorus olitorius cultivar O-4 contig20240, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3915
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.34


Found at i:970 original size:1 final size:1

Alignment explanation


    Indices: 964--991  Score: 56
    Period size: 1  Copynumber: 28.0  Consensus size: 1

        954 GAAAGAGTTG

                                        
        964 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT

        992 ATGTTTGGCA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   27  1.00

ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00


Consensus pattern (1 bp):   
T

Found at i:1739 original size:12 final size:12

Alignment explanation


    Indices: 1722--1751  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

       1712 GAGAGTTTTG

                        
       1722 GAGGATATTGAA
          1 GAGGATATTGAA

                       *
       1734 GAGGATATTGAG
          1 GAGGATATTGAA

                  
       1746 GAGGAT
          1 GAGGAT

       1752 TGGTTTAGTA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.37, C:0.00, G:0.40, T:0.23


Consensus pattern (12 bp):   
GAGGATATTGAA
Done.