Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020209.1 Corchorus olitorius cultivar O-4 contig20242, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64728

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3976--4011
18
1.9
18
94
5
63
75
0
16
8
1.04
3978--4011
6
5.5
6
89
3
50
76
0
17
5
0.98
4027--4076
10
5.4
9
77
18
50
74
0
26
0
0.83
4028--4075
16
3.0
17
88
8
66
77
0
22
0
0.78
3949--4057
46
2.3
46
86
9
150
62
10
22
5
1.47
4038--4075
5
8.0
5
82
11
53
78
0
21
0
0.74
5256--5312
12
4.7
13
75
12
59
38
3
8
49
1.51
6850--6914
25
2.3
29
75
20
84
21
9
9
60
1.55
6862--6914
25
2.1
25
96
0
97
18
9
9
62
1.52
6914--6952
20
2.0
20
85
10
53
28
5
2
64
1.28
7124--7329
22
9.3
22
72
11
134
34
10
17
37
1.84
7168--7330
68
2.4
66
83
2
182
34
11
17
35
1.87
7358--7782
22
18.9
22
67
14
156
39
9
17
34
1.82
7589--8287
44
15.9
43
68
16
210
38
9
16
36
1.81
7589--7780
87
2.2
87
80
9
212
41
8
14
35
1.76
7633--7779
43
3.4
43
75
11
122
42
10
13
34
1.78
7861--8340
22
22.0
21
72
11
276
37
10
16
35
1.82
7966--8084
60
2.0
60
83
1
148
41
6
15
36
1.73
7921--8128
104
2.0
105
79
7
226
39
8
16
35
1.78
8392--8434
22
2.0
22
81
9
52
48
6
13
30
1.69
8539--8571
2
16.5
2
100
0
66
48
0
0
51
1.00
12442--12475
16
2.3
14
90
10
50
47
0
14
38
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12551--12598
18
2.8
16
78
12
51
39
6
16
37
1.74
15139--15164
7
3.7
7
100
0
52
38
0
0
61
0.96
17761--17798
11
3.5
11
85
10
51
57
2
0
39
1.12
20359--20425
31
2.1
32
97
2
127
23
14
17
43
1.87
25803--25883
41
2.1
37
82
13
94
39
14
11
34
1.82
25953--26020
29
2.3
29
97
2
127
33
13
2
50
1.56
32763--32788
9
2.9
9
100
0
52
23
19
0
57
1.40
32857--32888
11
2.9
11
95
0
55
0
12
0
87
0.54
32857--32887
16
2.0
15
93
6
53
0
9
0
90
0.46
35540--35624
41
2.1
41
100
0
170
30
11
28
29
1.92
35685--35721
19
1.9
19
94
0
65
13
10
8
67
1.41
37586--37632
13
3.6
13
81
18
53
31
0
8
59
1.27
42055--42139
41
2.1
41
90
0
134
31
11
27
29
1.92
42200--42236
19
1.9
19
94
0
65
13
10
8
67
1.41
44110--44156
13
3.6
13
81
18
53
31
0
8
59
1.27
48314--48387
22
3.4
21
77
5
85
39
12
8
40
1.72
48422--48471
23
2.3
23
89
6
77
36
16
8
40
1.77
48438--48520
43
2.0
43
80
7
98
26
19
9
44
1.81
49320--49349
2
15.0
2
92
0
51
46
3
0
50
1.18
50337--50398
25
2.5
24
80
12
63
46
1
9
41
1.46
50447--50717
90
3.0
92
95
1
483
25
21
30
22
1.98
51428--51453
2
13.0
2
100
0
52
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53581--53627
14
3.4
14
70
5
51
59
2
8
29
1.39
53443--54047
149
4.0
150
95
1
1063
53
3
8
34
1.48
64581--64663
30
2.8
29
89
5
121
33
28
4
32
1.78

Tables:   1

The End!