Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020210.1 Corchorus olitorius cultivar O-4 contig20243, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7142
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35


Found at i:5194 original size:31 final size:31

Alignment explanation


    Indices: 5154--5215  Score: 97
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       5144 AAAGTTATTA

                       * *                 
       5154 ATGAATATTGTGATTATTCATGAATCAAGAG
          1 ATGAATATTGTAAATATTCATGAATCAAGAG

                *                          
       5185 ATGATTATTGTAAATATTCATGAATCAAGAG
          1 ATGAATATTGTAAATATTCATGAATCAAGAG

       5216 TTCTCTTGTG


Statistics
Matches: 28,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  31   28  1.00

ACGTcount: A:0.40, C:0.06, G:0.18, T:0.35


Consensus pattern (31 bp):   
ATGAATATTGTAAATATTCATGAATCAAGAG

Found at i:6496 original size:29 final size:29

Alignment explanation


    Indices: 6464--6524  Score: 104
    Period size: 29  Copynumber: 2.1  Consensus size: 29

       6454 ATAATATGCA

                          *              
       6464 CATTATTTCTCATATACATCTCCCAATCT
          1 CATTATTTCTCATACACATCTCCCAATCT

                                   *     
       6493 CATTATTTCTCATACACATCTCCGAATCT
          1 CATTATTTCTCATACACATCTCCCAATCT

               
       6522 CAT
          1 CAT

       6525 ACGCATCAGA


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  29   30  1.00

ACGTcount: A:0.28, C:0.31, G:0.02, T:0.39


Consensus pattern (29 bp):   
CATTATTTCTCATACACATCTCCCAATCT
Done.