Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020212.1 Corchorus olitorius cultivar O-4 contig20245, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53923

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11002--11063
31
2.0
31
96
0
115
30
16
16
37
1.90
18564--18756
96
2.0
96
95
0
350
33
23
13
29
1.94
26075--26104
15
2.0
15
93
0
51
83
0
10
6
0.81
26225--26253
9
3.3
9
95
4
51
0
44
0
55
0.99
32123--32233
53
2.1
53
98
0
213
27
21
9
42
1.83
32555--32598
2
22.0
2
81
9
54
0
43
4
52
1.22
33890--33941
26
2.0
26
96
0
95
28
21
7
42
1.80
35844--35869
13
2.0
13
100
0
52
84
0
0
15
0.62
36369--36400
2
16.5
2
93
6
57
50
0
0
50
1.00
41302--41597
148
2.0
148
97
0
565
34
17
23
23
1.96
45132--45225
45
2.2
45
90
7
151
38
21
5
35
1.76
46965--47011
25
1.9
24
95
4
85
55
8
6
29
1.55
53758--53813
29
2.0
29
89
3
87
39
19
10
30
1.86

Tables:   1

The End!