Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020215.1 Corchorus olitorius cultivar O-4 contig20248, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 845

Length: 1409
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31


Found at i:523 original size:4 final size:4

Alignment explanation


    Indices: 516--541  Score: 52
    Period size: 4  Copynumber: 6.5  Consensus size: 4

        506 TACCAAAGGA

                                            
        516 AAAT AAAT AAAT AAAT AAAT AAAT AA
          1 AAAT AAAT AAAT AAAT AAAT AAAT AA

        542 GTGAATGAAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   22  1.00

ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23


Consensus pattern (4 bp):   
AAAT

Done.