Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020217.1 Corchorus olitorius cultivar O-4 contig20250, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15969
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.33


Found at i:6337 original size:24 final size:24

Alignment explanation


    Indices: 6307--6364  Score: 80
    Period size: 24  Copynumber: 2.4  Consensus size: 24

       6297 AATGGGGGGT

                      *            *
       6307 GGTGGAGGAATGCTCCGATTCTGG
          1 GGTGGAGGAACGCTCCGATTCTGA

                     *  *           
       6331 GGTGGAGGAGCGTTCCGATTCTGA
          1 GGTGGAGGAACGCTCCGATTCTGA

                      
       6355 GGTGGAGGAA
          1 GGTGGAGGAA

       6365 GTGCAGGTTG


Statistics
Matches: 29,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  24   29  1.00

ACGTcount: A:0.19, C:0.14, G:0.45, T:0.22


Consensus pattern (24 bp):   
GGTGGAGGAACGCTCCGATTCTGA
Done.