Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002022.1 Corchorus olitorius cultivar O-4 contig02022, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 822

Length: 1371
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33


Found at i:145 original size:28 final size:27

Alignment explanation


    Indices: 114--181  Score: 109
    Period size: 28  Copynumber: 2.4  Consensus size: 27

        104 TTCAAGTGGG

                                        
        114 AAAGTGGTGGGAATGGCATTCCCACCTA
          1 AAAG-GGTGGGAATGGCATTCCCACCTA

                                        
        142 AAAGAGGTGGGAATGGCATTCCCACCTA
          1 AAAG-GGTGGGAATGGCATTCCCACCTA

                *       
        170 AAAGAGTGGGAA
          1 AAAGGGTGGGAA

        182 ATTTACTTTC


Statistics
Matches: 38,  Mismatches: 2, Indels: 1
        0.93            0.05        0.02

Matches are distributed among these distances:
  27    7  0.18
  28   31  0.82

ACGTcount: A:0.34, C:0.18, G:0.31, T:0.18


Consensus pattern (27 bp):   
AAAGGGTGGGAATGGCATTCCCACCTA
Done.