Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020221.1 Corchorus olitorius cultivar O-4 contig20254, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53706

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49--81
16
2.1
15
94
5
57
66
12
6
15
1.42
3304--3345
18
2.3
18
91
4
66
28
7
26
38
1.82
8544--8624
45
1.9
41
87
7
101
40
20
6
32
1.77
9925--9966
22
1.9
22
85
0
57
33
21
14
30
1.93
9937--10337
22
18.5
22
70
11
123
35
16
10
37
1.83
10089--10383
22
13.7
22
71
12
137
34
17
8
39
1.81
10767--10991
4
58.5
4
65
15
82
64
1
8
24
1.30
10842--10993
15
10.0
15
68
16
89
63
1
8
26
1.31
10882--10991
27
4.4
27
72
23
96
62
1
8
27
1.33
10912--10995
19
4.1
19
70
22
62
61
1
9
27
1.34
10842--10994
46
3.3
46
89
2
211
62
1
9
26
1.33
10871--10998
46
2.8
46
93
1
213
62
2
7
27
1.35
12894--13003
27
4.4
27
70
23
87
61
1
8
28
1.34
12927--13007
19
3.9
19
69
23
56
61
1
9
27
1.35
12891--13013
46
2.7
46
94
0
210
60
2
8
29
1.38
13391--13437
21
2.2
21
92
0
76
53
14
10
21
1.71
14160--14565
22
18.3
22
72
12
219
35
15
9
39
1.79
14160--14830
66
10.0
65
69
15
174
35
16
9
38
1.80
14289--14349
21
2.9
21
97
2
113
34
13
6
45
1.69
14700--14826
22
5.7
23
77
9
104
35
17
10
37
1.84
14677--14825
44
3.4
42
76
9
129
35
16
10
37
1.83
19028--19101
16
4.6
16
75
6
69
8
10
39
41
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19110--19150
16
2.5
17
76
15
50
4
14
36
43
1.67
26407--26518
46
2.4
46
93
1
188
34
7
15
42
1.74
26822--26848
14
1.9
14
100
0
54
22
22
18
37
1.95
27996--28060
31
2.1
31
94
0
112
33
9
15
41
1.79
29113--29150
11
3.5
11
89
10
51
39
0
2
57
1.12
32700--32797
48
2.0
48
92
0
160
27
11
23
37
1.89
33163--33253
45
2.0
45
100
0
182
48
19
8
23
1.77
35179--35235
23
2.5
22
91
2
87
47
10
5
36
1.61
35175--36082
22
41.7
21
64
18
163
36
15
9
38
1.79
35858--36111
44
5.7
44
74
8
199
37
16
9
36
1.81
35865--36087
66
3.3
66
84
5
261
36
17
9
36
1.82
35921--36106
69
2.8
64
82
8
194
36
16
9
37
1.82
36717--36759
22
2.0
22
95
0
77
30
13
18
37
1.90
36722--36769
22
2.2
22
81
7
53
37
12
14
35
1.84
36833--36913
22
3.6
22
85
3
108
45
8
9
35
1.68
36833--37001
22
7.7
22
73
2
106
40
12
14
33
1.83
36881--37001
43
2.8
45
77
6
140
38
14
16
31
1.88
36967--37017
22
2.3
22
83
6
68
43
9
11
35
1.75
37090--37190
22
4.6
21
77
14
78
33
10
14
40
1.81
40558--40725
31
5.5
31
71
8
148
34
17
17
29
1.94
40562--40726
60
2.8
59
89
1
267
35
17
18
29
1.94
40764--40867
31
3.4
31
73
5
113
25
19
18
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40765--40927
60
2.7
60
92
1
256
25
18
19
36
1.94
44171--44201
7
4.3
7
95
4
53
83
0
0
16
0.64
51585--51663
41
1.9
41
86
0
113
27
16
5
50
1.66

Tables:   1

The End!