Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020227.1 Corchorus olitorius cultivar O-4 contig20260, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19054

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1651--1887
131
1.8
131
93
0
413
28
13
18
40
1.87
6959--6988
13
2.3
13
94
0
51
56
16
3
23
1.55
8005--8066
26
2.4
25
82
17
74
0
29
3
67
1.06
8240--8342
34
3.2
34
64
20
94
12
45
31
10
1.76
8218--8350
62
2.1
62
98
0
257
12
45
32
9
1.75
9758--9804
22
2.1
22
88
0
67
34
0
53
12
1.39
11557--12154
22
27.3
22
69
13
217
34
15
9
40
1.80
11884--11963
23
3.5
23
86
6
110
38
17
6
37
1.75
12235--12426
44
4.4
44
75
10
148
33
13
9
43
1.76
12260--12424
22
7.7
21
77
9
113
34
13
9
43
1.76
12508--12622
22
5.4
21
68
20
69
36
17
7
38
1.79
12627--12839
22
9.6
22
72
12
141
38
16
8
36
1.79
12627--12835
44
4.7
45
74
9
162
38
15
8
36
1.79
12627--12839
66
3.2
65
82
6
232
38
16
8
36
1.79
13877--13935
26
2.3
26
96
0
109
44
13
18
23
1.86
17051--17133
42
2.0
43
88
7
125
22
19
22
34
1.96
17121--17163
20
2.1
21
86
4
61
39
20
18
20
1.93
17624--17654
12
2.6
12
94
0
53
48
32
19
0
1.49
18006--18085
29
2.7
30
90
3
117
28
17
11
42
1.84
18209--18306
31
3.1
31
89
2
151
43
11
14
30
1.80

Tables:   1

The End!