Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020230.1 Corchorus olitorius cultivar O-4 contig20263, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4932
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32


Found at i:4430 original size:57 final size:57

Alignment explanation


    Indices: 4324--4437  Score: 149
    Period size: 57  Copynumber: 2.0  Consensus size: 57

       4314 TGATAACTTG

                                *  *          *         *            
       4324 GATCATCATCAACAACCAGCTGCTGATCATCCTGGTCGCGAAGAGGCAGCAAGGGAA
          1 GATCATCATCAACAACCAGCAGCAGATCATCCTGATCGCGAAGACGCAGCAAGGGAA

                                     * *  *                           
       4381 GATCATCATCAACAACCAGCAGCAGTTGATTCTGATCAGC-AAGACGCAGCAAGGGAA
          1 GATCATCATCAACAACCAGCAGCAGATCATCCTGATC-GCGAAGACGCAGCAAGGGAA

       4438 CTGCCAAAAT


Statistics
Matches: 49,  Mismatches: 7, Indels: 2
        0.84            0.12        0.03

Matches are distributed among these distances:
  57   47  0.96
  58    2  0.04

ACGTcount: A:0.34, C:0.25, G:0.25, T:0.16


Consensus pattern (57 bp):   
GATCATCATCAACAACCAGCAGCAGATCATCCTGATCGCGAAGACGCAGCAAGGGAA
Done.