Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020233.1 Corchorus olitorius cultivar O-4 contig20266, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110511

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
155--203
15
3.3
15
80
11
55
2
44
0
53
1.12
2102--2215
56
2.0
57
90
8
180
34
29
2
33
1.72
4254--4292
20
2.0
20
89
0
60
25
23
17
33
1.96
13895--14016
42
2.8
44
86
6
185
18
10
18
52
1.73
20379--20443
34
1.9
34
100
0
130
47
12
9
30
1.72
21104--21185
30
2.7
30
96
0
146
32
7
21
37
1.81
32424--32488
4
16.2
4
100
0
130
50
24
0
24
1.49
45000--45047
2
24.0
2
82
0
60
45
4
4
45
1.41
47806--47891
42
2.0
43
93
2
147
27
24
2
45
1.65
48561--48611
22
2.4
21
83
6
66
47
9
11
31
1.73
48704--48758
28
2.0
28
85
0
74
34
1
21
41
1.64
48884--48944
20
3.0
21
71
9
54
44
16
8
31
1.77
48991--49170
87
2.1
86
92
3
306
47
7
12
32
1.69
52132--52187
2
30.5
2
79
16
68
46
0
0
53
1.00
52141--52179
7
6.0
7
88
11
57
43
0
0
56
0.99
52132--52187
18
3.2
18
94
2
96
46
0
0
53
1.00
52430--52526
22
4.5
22
69
17
62
43
27
10
18
1.83
52423--52502
21
3.8
20
74
12
63
47
25
10
17
1.78
52469--52535
21
3.1
21
72
4
71
37
28
11
22
1.90
52577--52644
23
3.1
22
74
16
61
33
23
16
26
1.95
52564--52874
87
3.6
86
85
5
410
42
19
13
24
1.88
52515--52874
174
2.1
175
85
1
472
41
20
13
24
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52958--53025
20
3.3
21
77
6
59
27
8
14
48
1.74
59205--59238
2
17.5
2
93
6
61
47
0
0
52
1.00
64363--64681
169
1.9
166
83
5
410
28
15
16
38
1.90
87099--87125
12
2.2
12
100
0
54
62
0
22
14
1.31
89142--89171
13
2.3
13
94
0
51
26
0
0
73
0.84
90347--90396
17
3.0
16
82
8
64
34
20
22
24
1.97
92090--92288
79
2.5
79
87
0
274
26
16
22
34
1.95

Tables:   1

The End!