Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020235.1 Corchorus olitorius cultivar O-4 contig20268, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25093

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22--68
16
2.8
17
76
17
53
10
2
17
70
1.26
4144--4176
1
33.0
1
100
0
66
0
0
0
100
0.00
13144--13646
144
3.5
143
89
3
735
31
21
16
31
1.95
13175--13540
72
5.1
72
70
4
299
31
20
16
31
1.94
13219--13593
72
5.2
72
70
6
319
30
21
15
32
1.94
13262--14069
72
11.2
73
74
12
296
30
21
16
31
1.95
13144--14073
144
6.5
144
84
7
697
30
22
16
31
1.95
13144--14075
288
3.2
283
79
10
850
30
22
16
31
1.95
13589--14075
216
2.3
216
85
6
659
29
21
16
32
1.96
13589--14073
72
6.7
72
86
5
599
29
22
16
31
1.96
16513--16543
15
2.1
15
100
0
62
25
12
22
38
1.90
19717--19791
22
3.4
21
77
17
73
34
9
12
44
1.74
19812--19884
23
3.3
23
88
3
105
35
15
6
42
1.73
21384--21439
27
2.1
25
84
15
69
50
1
5
42
1.35
21560--21702
21
6.7
22
77
7
118
38
12
8
40
1.73
23700--23760
27
2.3
26
83
16
72
45
1
8
44
1.43
23885--24002
44
2.7
45
80
7
127
40
10
9
39
1.71
23885--24002
22
5.4
21
77
12
98
40
10
9
39
1.71
23885--24047
44
3.7
42
77
13
118
39
10
9
41
1.71

Tables:   1

The End!