Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020237.1 Corchorus olitorius cultivar O-4 contig20270, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4658
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30


Found at i:909 original size:36 final size:37

Alignment explanation


    Indices: 868--951  Score: 143
    Period size: 37  Copynumber: 2.3  Consensus size: 37

        858 AATAATTTAT

                                          *  *   
        868 TAAAACATTTTAT-AAGCATTTAAATAAAATCAGTAA
          1 TAAAACATTTTATAAAGCATTTAAATAAAAACAATAA

                                                 
        904 TAAAACATTTTATAAAGCATTTAAATAAAAACAATAA
          1 TAAAACATTTTATAAAGCATTTAAATAAAAACAATAA

                       
        941 TAAAACATTTT
          1 TAAAACATTTT

        952 CCTCAACGGG


Statistics
Matches: 45,  Mismatches: 2, Indels: 1
        0.94            0.04        0.02

Matches are distributed among these distances:
  36   13  0.29
  37   32  0.71

ACGTcount: A:0.55, C:0.08, G:0.04, T:0.33


Consensus pattern (37 bp):   
TAAAACATTTTATAAAGCATTTAAATAAAAACAATAA

Done.