Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020242.1 Corchorus olitorius cultivar O-4 contig20275, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7745
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34


Found at i:931 original size:5 final size:5

Alignment explanation


    Indices: 921--947  Score: 54
    Period size: 5  Copynumber: 5.4  Consensus size: 5

        911 GTTGAAGGAA

                                            
        921 TATTT TATTT TATTT TATTT TATTT TA
          1 TATTT TATTT TATTT TATTT TATTT TA

        948 AGGAGAATTA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   22  1.00

ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78


Consensus pattern (5 bp):   
TATTT

Done.