Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020243.1 Corchorus olitorius cultivar O-4 contig20276, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46303

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1602--1649
24
2.0
24
87
0
69
62
14
8
14
1.53
4194--4237
22
2.0
23
86
4
63
68
13
9
9
1.40
9602--9821
73
3.0
71
84
10
270
40
8
15
35
1.78
22502--22538
2
18.5
2
100
0
74
48
0
0
51
1.00
23132--23180
25
2.0
25
95
0
89
14
32
18
34
1.91
24011--24090
31
2.6
32
92
6
137
18
13
12
55
1.70
27172--27206
11
3.2
11
83
0
52
77
17
5
0
0.96
27323--27358
19
1.9
18
88
5
54
33
22
2
41
1.68
27323--27369
11
4.7
10
80
17
53
31
21
6
40
1.78
30182--30260
31
2.5
31
82
6
97
32
21
12
32
1.91
36339--36401
6
11.0
6
90
10
105
33
15
0
50
1.45
43677--43723
22
2.1
22
92
0
76
25
14
8
51
1.71
43912--44329
133
3.1
133
97
0
791
38
11
17
32
1.86
44314--44359
23
2.0
22
84
12
58
50
6
19
23
1.71
45067--45109
9
5.0
9
88
5
63
51
0
23
25
1.49
45063--45109
18
2.7
18
90
9
80
48
0
21
29
1.50
45067--45108
8
5.0
8
91
8
66
50
0
23
26
1.50

Tables:   1

The End!