Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020244.1 Corchorus olitorius cultivar O-4 contig20277, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58057

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
392--532
49
3.0
47
81
9
162
24
15
7
51
1.70
5441--5476
18
2.0
18
88
0
54
27
0
22
50
1.50
6005--6034
5
6.0
5
92
0
51
56
0
43
0
0.99
6993--7027
15
2.3
15
90
9
54
51
0
0
48
1.00
8191--8245
18
3.0
18
94
2
92
52
0
0
47
1.00
19467--19560
45
2.2
43
88
7
138
39
22
4
34
1.74
27891--27964
36
2.1
36
97
0
139
20
16
12
51
1.76
29755--29811
29
2.0
29
82
0
69
61
3
14
21
1.47
31403--31457
27
2.1
26
83
10
67
40
1
0
58
1.09
34670--34695
11
2.4
11
100
0
52
7
53
0
38
1.30
38285--38326
21
2.0
21
85
0
57
47
11
16
23
1.80
39646--39672
14
1.9
14
100
0
54
70
14
14
0
1.17
39778--39816
20
2.0
20
94
0
69
56
5
0
38
1.22
39890--39965
33
2.3
33
79
0
80
11
32
39
15
1.84
40140--40186
17
2.7
18
81
12
53
46
0
23
29
1.52
41044--41195
74
2.1
74
91
2
243
40
8
8
42
1.66
41126--41395
103
2.6
102
84
8
314
37
10
9
42
1.70
41235--41433
109
1.8
109
81
4
249
38
10
7
44
1.66
48122--48238
45
2.5
46
79
9
148
26
23
7
41
1.81
48122--48236
46
2.5
45
81
8
142
26
23
7
41
1.81
56147--56202
21
2.7
21
88
8
87
39
19
39
1
1.62
56147--56209
21
3.0
21
83
6
56
41
22
34
1
1.63

Tables:   1

The End!