Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020246.1 Corchorus olitorius cultivar O-4 contig20279, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39941

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7821--7854
8
4.2
8
88
0
50
2
8
35
52
1.47
10840--10913
30
2.3
32
88
9
107
21
6
24
47
1.75
15132--15156
13
1.9
13
100
0
50
32
0
0
68
0.90
15683--15733
26
2.0
26
88
0
75
31
25
11
31
1.92
16006--16077
21
3.4
21
82
3
83
51
1
44
2
1.24
15991--16041
12
4.2
12
80
5
59
49
0
50
0
1.00
15988--16075
21
4.3
21
73
16
55
50
1
46
2
1.21
19399--19466
34
2.0
35
91
2
111
44
16
7
32
1.75
24647--24697
17
3.1
16
86
8
66
35
21
21
21
1.96
30756--30780
2
12.5
2
100
0
50
48
0
0
52
1.00
33846--33926
42
1.9
42
94
0
144
46
16
8
28
1.76
34007--34106
51
2.0
51
97
0
191
36
4
27
33
1.75
36524--36564
19
2.2
19
95
0
73
53
4
17
24
1.63

Tables:   1

The End!