Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020249.1 Corchorus olitorius cultivar O-4 contig20282, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34280

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12433--12480
25
1.9
25
82
0
60
4
10
37
47
1.57
17656--17701
20
2.3
20
92
0
74
47
19
13
19
1.81
17664--17703
20
2.0
20
100
0
80
40
20
15
25
1.90
19410--19500
47
1.9
47
97
0
173
42
2
9
45
1.49
21379--21456
29
2.5
31
81
10
88
35
12
25
25
1.92
25545--25584
6
6.7
6
91
0
62
32
40
0
27
1.57
25545--25584
12
3.3
12
96
0
71
32
40
0
27
1.57
25541--25584
18
2.4
18
92
0
70
34
40
0
25
1.56
25917--26022
54
2.0
52
85
10
146
62
9
6
21
1.48
27206--27316
57
1.9
57
90
0
177
27
25
10
36
1.89
32347--32385
18
2.2
18
100
0
78
41
10
5
43
1.61

Tables:   1

The End!