Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020251.1 Corchorus olitorius cultivar O-4 contig20284, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61306

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--80
2
40.5
2
97
2
153
0
48
0
51
1.00
80--108
2
14.5
2
100
0
58
48
0
0
51
1.00
828--875
23
2.2
21
85
7
60
39
2
20
37
1.65
8319--8355
2
18.5
2
100
0
74
51
0
0
48
1.00
8580--8710
66
2.0
66
95
0
235
35
12
20
31
1.91
9097--9174
22
3.5
22
69
10
52
30
15
6
47
1.70
9098--9215
44
2.7
44
81
5
123
33
15
7
44
1.75
10878--10916
14
2.9
13
80
3
51
53
2
2
41
1.28
10902--11155
122
2.0
128
88
6
385
50
1
9
37
1.47
11768--11908
74
1.9
74
89
4
219
37
20
9
32
1.84
13867--13891
11
2.3
11
100
0
50
84
0
0
16
0.63
14189--14235
3
16.0
3
91
4
78
31
2
0
65
1.04
14459--14593
69
2.0
69
94
2
236
41
13
12
32
1.82
15860--15959
31
3.5
28
74
14
89
35
9
12
44
1.73
16577--16666
3
30.0
3
100
0
180
33
0
0
66
0.92
17346--17427
42
2.0
41
92
2
137
40
18
9
31
1.83
17771--17821
22
2.2
24
83
16
72
41
0
0
58
0.98
17771--17819
25
2.0
25
84
8
64
40
0
0
59
0.98
27326--27357
15
2.1
16
88
11
50
37
18
6
37
1.76
28542--28591
24
2.1
24
96
0
91
20
62
14
4
1.47
28942--28969
1
28.0
1
100
0
56
0
0
0
100
0.00
28957--29023
32
2.1
32
97
2
125
40
2
11
44
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30005--30061
28
2.0
28
83
6
71
59
5
14
21
1.54
30245--30287
20
2.2
20
86
0
59
25
20
13
39
1.90
30290--30364
37
2.0
37
100
0
150
29
2
33
34
1.72
30395--30470
33
2.3
33
84
6
93
32
14
23
28
1.94
32990--33498
255
2.0
255
98
0
982
36
25
10
27
1.89
36685--37154
234
2.0
234
99
0
922
31
24
13
29
1.94
53057--53115
29
2.0
29
100
0
118
35
10
16
37
1.83
53107--53131
2
12.5
2
100
0
50
52
0
0
48
1.00
53202--53228
14
1.9
14
100
0
54
37
11
7
44
1.68
53419--53488
32
2.2
32
84
5
88
22
15
15
45
1.84

Tables:   1

The End!