Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020253.1 Corchorus olitorius cultivar O-4 contig20286, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87606

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3105--3146
2
21.0
2
100
0
84
50
0
0
50
1.00
4476--4533
27
2.1
27
83
0
71
32
13
22
31
1.93
8685--8922
107
2.2
107
98
0
458
12
20
31
35
1.89
8963--9009
26
1.9
23
83
12
58
38
4
6
51
1.47
13923--13977
27
2.0
27
100
0
110
32
7
25
34
1.83
15548--15575
2
14.0
2
100
0
56
50
0
0
50
1.00
30569--31052
243
2.0
234
82
9
571
34
9
30
25
1.89
34372--34502
64
2.0
65
97
1
246
30
20
17
31
1.96
35183--35759
288
2.0
288
98
0
1109
30
23
16
28
1.97
38243--38300
30
1.9
30
96
0
107
29
24
0
46
1.53
46799--46892
45
2.2
42
83
7
109
37
6
19
37
1.77
49333--49373
16
2.5
17
88
8
66
56
4
17
21
1.60
52189--52220
2
16.5
2
93
6
57
50
0
0
50
1.00
58145--58169
12
2.1
12
100
0
50
0
0
8
92
0.40
58377--58428
1
52.0
1
92
0
86
0
0
3
96
0.24
63255--63295
16
2.6
16
100
0
82
21
0
0
78
0.76

Tables:   1

The End!