genome.fa.s20254.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020254.1 Corchorus olitorius cultivar O-4 contig20287, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98596

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
676--732	25	2.4	25	88	5	82	31	5	3	59	1.36
3798--3849	20	2.6	19	82	14	61	28	13	5	51	1.64
4986--5028	22	1.9	23	85	4	61	27	11	13	46	1.78
16710--16736	13	2.1	13	100	0	54	48	0	14	37	1.45
17728--17768	2	20.5	2	94	0	73	51	2	0	46	1.14
18250--18280	12	2.6	12	94	0	53	0	19	32	48	1.49
18490--18519	2	15.0	2	100	0	60	50	0	0	50	1.00
18758--18800	20	2.1	21	86	4	61	20	18	20	39	1.93
18788--18870	42	2.0	43	85	7	116	36	22	18	22	1.95
18843--18887	21	2.4	19	85	14	58	46	26	17	8	1.78
25485--25515	16	2.0	15	93	6	53	0	25	58	16	1.38
28947--29122	91	1.9	91	89	0	271	33	5	15	45	1.70
29189--29239	19	2.8	18	82	8	68	54	17	1	25	1.53
29194--29237	19	2.2	20	92	4	72	61	15	2	20	1.45
29232--29318	43	2.0	43	100	0	174	40	16	2	41	1.60
32538--33785	442	2.8	437	89	1	1861	27	13	16	42	1.86
34736--34809	29	2.6	28	91	4	123	39	10	6	43	1.66
37977--38256	144	2.0	143	92	2	463	28	19	21	30	1.97
41705--41809	16	6.6	16	78	12	126	6	13	40	39	1.71
41720--41809	32	2.8	32	91	0	144	6	13	41	38	1.71
41799--41857	6	10.3	6	78	7	52	3	20	49	27	1.65
41812--41856	22	2.0	22	95	0	81	2	20	53	24	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41800--41857	17	3.4	17	83	7	73	3	20	50	25	1.64
42142--42213	31	2.3	31	75	17	78	61	8	4	26	1.43
42621--42696	22	3.5	22	67	12	57	2	23	48	25	1.64
49502--49562	29	2.1	29	81	9	70	40	3	6	49	1.45
50410--50730	99	3.1	100	82	13	412	50	5	18	24	1.69
50509--50730	114	1.9	114	94	1	392	51	5	18	23	1.67
50652--51604	441	2.2	439	81	6	1099	41	13	14	29	1.85
51498--51832	168	2.0	167	99	0	661	45	14	14	25	1.83
56680--56763	42	2.0	42	100	0	168	35	19	14	30	1.91
60706--60757	26	2.0	26	92	0	86	13	25	21	40	1.89
61101--61161	32	1.9	32	96	0	113	37	11	0	50	1.39
63735--63793	27	2.2	27	84	6	75	20	11	22	45	1.83
67246--67302	22	2.6	22	88	2	62	28	15	15	40	1.88
67256--67302	22	2.1	22	100	0	94	25	17	12	44	1.84
69811--70151	162	2.1	164	91	2	553	34	20	17	28	1.95
73206--73319	32	3.5	32	92	2	174	31	27	16	24	1.96
73532--73578	24	2.0	24	91	0	76	21	25	23	29	1.99
75230--75266	2	18.5	2	100	0	74	48	0	0	51	1.00
75607--77595	335	6.1	333	77	6	1850	33	14	15	35	1.88
75706--77568	989	1.9	982	82	3	2341	34	13	15	35	1.88
79232--79261	12	2.4	13	88	11	53	13	6	13	66	1.43
79453--80687	324	3.8	321	80	9	1315	33	14	16	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81945--81977	16	2.1	16	100	0	66	39	0	6	54	1.25
82078--82115	19	2.0	20	85	15	53	28	5	2	63	1.30
82281--82469	22	8.5	22	74	9	159	34	8	17	38	1.82
82282--83420	44	26.5	44	66	18	200	37	9	17	35	1.83
82282--82469	68	2.8	66	80	6	175	35	9	18	37	1.82
82548--82607	22	2.7	23	77	10	72	33	6	11	48	1.66
82666--82743	22	3.5	22	76	13	77	41	8	16	33	1.80
82795--82873	22	3.6	23	75	10	76	41	10	15	32	1.80
83022--83050	14	2.1	14	100	0	58	41	13	6	37	1.72
83000--83071	36	2.0	36	86	5	101	41	11	11	36	1.76
83057--83423	22	16.9	22	72	6	219	36	10	17	35	1.83
83291--83417	67	1.9	66	80	7	150	33	12	15	37	1.86
84593--85155	132	4.3	132	87	1	761	31	17	14	36	1.90
85594--85993	201	2.0	201	91	1	649	35	15	14	34	1.88
86810--86853	22	2.0	22	100	0	88	31	22	9	36	1.86
89144--89220	29	2.5	31	85	6	113	29	28	12	28	1.94
89144--89248	31	3.5	30	78	10	99	25	26	15	32	1.95
89516--89587	29	2.5	29	82	6	92	33	9	23	33	1.88
89807--89867	25	2.7	22	68	22	54	45	13	8	32	1.72
90884--91586	351	2.0	351	86	0	976	31	19	16	32	1.94
92768--92793	8	3.2	8	100	0	52	50	11	0	38	1.39
95273--95578	105	2.9	105	99	0	594	38	17	15	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95731--95784	21	2.6	21	94	5	92	27	16	25	29	1.97
97638--97674	2	19.0	2	94	5	67	48	0	0	51	1.00
98030--98076	21	2.2	21	85	7	60	12	14	0	72	1.13

Tables:   1

The End!