Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020259.1 Corchorus olitorius cultivar O-4 contig20292, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77886

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16380--17238
430
2.0
430
95
0
1531
36
16
20
27
1.93
21546--21685
31
4.5
31
84
0
172
29
25
25
19
1.98
21546--21715
31
5.5
31
83
0
160
29
24
25
20
1.99
24482--24517
3
11.7
3
94
5
63
66
0
33
0
0.92
26610--26636
13
2.1
13
100
0
54
22
22
22
33
1.97
41105--41219
39
2.9
39
94
1
203
39
8
29
22
1.84
42707--42769
33
1.9
33
96
0
117
26
44
15
12
1.83
42707--42829
30
4.0
30
81
3
111
25
40
17
17
1.90
57960--57993
4
8.8
4
90
6
52
2
17
0
79
0.86
67239--67340
48
2.1
48
100
0
204
30
11
32
25
1.91
74378--74408
1
31.0
1
100
0
62
100
0
0
0
0.00
74538--74571
16
2.2
16
89
5
52
0
17
17
64
1.29
75935--75982
21
2.3
21
96
0
87
12
43
25
18
1.85
75935--75992
21
2.8
21
89
0
71
12
44
20
22
1.84
76036--76064
14
2.0
15
93
6
51
17
62
0
20
1.33
76192--76232
18
2.3
18
86
0
55
9
53
26
9
1.65
77778--77833
29
2.0
28
92
3
94
39
21
10
28
1.87

Tables:   1

The End!