Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020264.1 Corchorus olitorius cultivar O-4 contig20297, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50629

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11763--11880
31
3.5
31
68
20
92
27
21
17
33
1.96
13899--13959
29
2.1
29
96
0
113
39
3
21
36
1.70
14099--14214
58
2.0
58
94
0
205
40
6
15
37
1.74
16072--16308
118
2.0
118
99
0
465
40
25
8
25
1.84
17704--18049
154
2.3
153
93
1
586
23
18
18
39
1.92
22266--22303
19
2.0
20
85
15
53
28
5
2
63
1.30
22474--23166
44
15.9
42
68
16
233
38
9
17
34
1.83
22466--23166
66
10.3
68
69
14
258
37
9
17
34
1.83
22477--22697
22
10.0
22
73
12
121
36
9
17
36
1.82
22749--22850
22
4.6
22
71
9
82
37
9
16
36
1.82
22914--23168
22
11.7
22
70
7
117
40
10
15
33
1.81
23248--23431
22
8.5
21
67
15
81
41
10
14
33
1.80
23417--23462
15
3.0
15
81
6
65
39
6
13
41
1.70
23417--23464
16
3.1
16
79
14
64
39
6
12
41
1.68
23451--23535
23
3.7
23
81
7
95
36
8
14
41
1.75
23448--23698
22
11.3
22
69
7
112
34
10
17
38
1.83
29917--29947
2
15.5
2
100
0
62
51
0
0
48
1.00
31283--31390
56
1.9
56
92
0
180
34
12
22
30
1.92
34715--34892
90
2.0
89
94
1
311
49
7
6
36
1.57
35804--35835
5
6.4
5
96
0
55
43
0
0
56
0.99
38057--38083
13
2.1
13
100
0
54
37
0
14
48
1.45
39527--39579
27
1.9
28
88
11
83
58
0
7
33
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40403--40427
12
2.1
12
100
0
50
32
0
0
68
0.90
41120--41406
142
2.0
143
93
0
486
38
11
12
37
1.79
41529--41602
28
2.5
28
81
12
87
40
14
25
18
1.89
41541--41603
31
2.1
29
85
11
83
46
14
20
19
1.84
42102--42193
30
3.1
30
100
0
184
26
9
17
46
1.79
49301--49326
4
6.5
4
100
0
52
76
0
0
23
0.78

Tables:   1

The End!