Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020270.1 Corchorus olitorius cultivar O-4 contig20303, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5326
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29


Found at i:3744 original size:36 final size:36

Alignment explanation


    Indices: 3700--3776  Score: 154
    Period size: 36  Copynumber: 2.1  Consensus size: 36

       3690 AACCAAGGAG

                                                
       3700 GCAGCAATTTCTTCAATCTGCTTGCACTTCTCTATA
          1 GCAGCAATTTCTTCAATCTGCTTGCACTTCTCTATA

                                                
       3736 GCAGCAATTTCTTCAATCTGCTTGCACTTCTCTATA
          1 GCAGCAATTTCTTCAATCTGCTTGCACTTCTCTATA

                 
       3772 GCAGC
          1 GCAGC

       3777 TTGCTCCCTG


Statistics
Matches: 41,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   41  1.00

ACGTcount: A:0.22, C:0.29, G:0.13, T:0.36


Consensus pattern (36 bp):   
GCAGCAATTTCTTCAATCTGCTTGCACTTCTCTATA
Done.