Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020271.1 Corchorus olitorius cultivar O-4 contig20304, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3212
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34


Found at i:2004 original size:15 final size:15

Alignment explanation


    Indices: 1974--2015  Score: 75
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       1964 TTACTTTGTT

                            
       1974 TTGTTTTCTAGTTTAA
          1 TTGTTTTCT-GTTTAA

                           
       1990 TTGTTTTCTGTTTAA
          1 TTGTTTTCTGTTTAA

                       
       2005 TTGTTTTCTGT
          1 TTGTTTTCTGT

       2016 CAATCTCTGT


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  15   17  0.65
  16    9  0.35

ACGTcount: A:0.12, C:0.07, G:0.14, T:0.67


Consensus pattern (15 bp):   
TTGTTTTCTGTTTAA
Done.