genome.fa.s20279.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020279.1 Corchorus olitorius cultivar O-4 contig20312, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  160609

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1275--1320	23	2.0	23	100	0	92	39	8	17	34	1.80
1573--1621	24	2.0	24	92	7	82	36	12	16	34	1.86
1993--2028	7	5.1	7	96	0	63	30	0	16	52	1.44
2520--2645	24	5.4	23	83	9	132	4	42	33	19	1.73
2520--2664	24	6.3	23	82	12	101	4	40	33	21	1.74
2533--2664	45	2.9	45	82	7	151	4	41	31	21	1.73
2584--2673	21	4.1	21	75	13	67	4	38	32	24	1.75
20604--20646	17	2.6	16	85	10	59	34	20	23	20	1.96
22880--22911	15	2.1	16	94	5	57	6	0	40	53	1.26
29023--29134	55	2.0	55	98	0	215	39	8	20	31	1.83
29845--29891	19	2.4	20	96	3	87	57	0	0	42	0.98
47074--47135	30	2.1	30	87	3	90	53	16	12	17	1.73
63401--63449	21	2.3	22	82	7	64	53	26	0	20	1.46
63938--63981	15	2.9	15	83	12	54	40	2	2	54	1.25
71579--71653	24	3.1	24	90	0	114	9	17	28	45	1.79
76404--76536	38	3.6	38	87	3	182	39	13	18	27	1.89
76509--76593	27	3.1	27	93	0	134	40	8	18	32	1.81
76971--77135	37	4.8	33	77	15	133	28	15	17	38	1.91
76971--77096	64	1.9	66	85	3	175	27	15	18	38	1.91
76974--77136	36	4.7	36	80	11	130	28	15	17	37	1.91
76969--77111	64	2.2	62	80	9	153	28	16	17	37	1.91
80174--80257	12	7.0	12	81	0	78	16	26	2	54	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80176--80251	24	3.2	24	80	0	98	15	26	2	55	1.54
80408--80453	24	1.9	24	91	8	76	26	26	0	47	1.52
80408--80466	24	2.5	24	83	8	75	28	25	1	44	1.64
80681--80709	13	2.2	13	100	0	58	37	17	0	44	1.49
82469--82585	33	3.6	33	81	4	112	14	35	35	15	1.88
84508--84590	22	3.8	22	77	6	96	39	10	12	37	1.78
84504--84722	22	10.0	21	67	11	86	42	9	12	35	1.76
84870--84913	23	1.9	23	85	0	61	27	9	20	43	1.82
84854--85065	22	9.7	23	71	10	99	33	9	18	39	1.83
84971--85052	43	1.9	43	89	0	128	32	7	18	41	1.78
92353--92414	31	2.0	31	90	0	97	32	24	4	38	1.76
93271--93304	16	2.1	16	94	0	59	5	14	38	41	1.70
99097--99129	17	1.9	17	93	0	57	39	0	0	60	0.97
129451--129528	22	3.6	22	75	3	86	32	10	14	43	1.78
129456--129572	43	2.7	43	81	5	121	31	10	17	41	1.83
129941--130159	22	9.8	22	72	11	115	40	9	15	33	1.80
129947--130136	66	2.8	67	79	13	178	42	8	15	33	1.78
136222--136269	23	2.1	23	96	0	87	27	6	27	39	1.80
136478--136517	17	2.4	17	100	0	80	12	25	15	47	1.80
137703--138032	178	1.9	178	88	2	502	36	12	15	35	1.86
141914--141974	30	2.0	30	90	6	97	37	18	22	21	1.94
143456--143482	14	1.9	14	100	0	54	22	18	22	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144025--144051	14	1.9	14	100	0	54	92	7	0	0	0.38
144019--144045	11	2.5	11	100	0	54	92	7	0	0	0.38
151835--151927	45	2.2	42	86	9	127	37	22	6	33	1.80
154459--154604	69	2.1	70	93	5	253	49	0	15	35	1.44
155240--155298	30	1.9	31	86	3	84	11	18	25	44	1.84
155444--155489	24	1.9	25	86	8	69	58	0	0	41	0.98
158298--158337	21	2.0	21	90	5	64	52	0	0	47	1.00
159283--159325	17	2.5	17	100	0	86	18	44	16	20	1.87
160493--160595	31	3.4	30	71	15	95	34	18	20	26	1.95
160496--160609	60	1.9	60	90	3	185	35	18	18	28	1.94

Tables:   1

The End!