genome.fa.s20280.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020280.1 Corchorus olitorius cultivar O-4 contig20313, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73637

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105--272	31	5.5	31	70	13	125	29	19	17	33	1.95
107--269	60	2.7	60	92	1	256	29	19	16	34	1.94
2675--2849	84	2.1	84	94	0	305	34	4	26	33	1.77
10869--10911	18	2.7	15	82	10	50	30	9	25	34	1.87
19819--19877	29	2.0	29	100	0	118	18	23	20	37	1.94
21364--21471	54	2.0	54	100	0	216	27	7	22	42	1.80
35888--35951	32	2.0	32	100	0	128	18	18	21	40	1.91
40168--40216	26	1.9	26	84	12	66	53	16	4	26	1.61
42970--43007	6	6.5	6	82	17	53	2	0	13	84	0.73
42969--43012	17	2.6	17	89	7	63	4	0	13	81	0.83
43464--43495	6	5.3	6	100	0	64	65	0	0	34	0.93
56262--56307	8	5.8	8	78	0	56	78	0	0	21	0.76
57096--57162	21	3.2	21	64	16	57	50	14	5	28	1.66
57083--57163	42	1.9	42	100	0	162	46	14	7	30	1.72
57229--57343	56	2.0	57	91	1	187	39	2	23	34	1.69
59187--59260	37	2.0	37	83	0	94	36	16	18	28	1.93
59394--59451	21	2.7	21	76	7	55	39	18	18	22	1.92
59641--59909	130	2.0	133	80	7	302	43	18	13	25	1.85
59809--59985	76	2.4	75	81	8	209	45	20	13	20	1.85
59656--60150	206	2.4	207	82	6	599	41	20	14	23	1.89
59891--60150	132	2.0	132	84	6	348	42	22	14	21	1.88
60104--60184	33	2.4	34	87	6	110	43	24	12	19	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60138--60242	57	1.9	53	82	7	129	42	20	11	24	1.85
60246--60292	21	2.2	21	92	0	76	42	23	4	29	1.73
61975--62043	28	2.5	28	97	0	129	30	15	5	47	1.69
65522--65567	8	5.8	8	78	0	56	78	2	0	19	0.86
65523--65570	24	2.0	24	95	0	87	72	2	0	25	0.95
67200--67350	55	2.7	57	84	5	198	41	21	14	23	1.90
67298--67379	37	2.2	36	89	2	119	39	18	14	28	1.90
67504--67556	21	2.5	21	81	3	61	35	22	18	22	1.95
67779--67830	21	2.5	21	96	0	95	44	25	7	23	1.79
67639--67850	109	1.9	109	83	5	277	42	18	9	29	1.82
67770--68252	208	2.3	207	83	5	591	42	21	13	22	1.87
67940--68120	76	2.4	76	82	8	235	44	20	13	20	1.85
68236--68316	33	2.4	34	87	6	110	43	24	11	20	1.85
69106--69175	27	2.6	27	76	10	65	47	2	2	47	1.32
70379--70420	17	2.5	17	73	3	50	76	0	0	23	0.79
72047--72193	55	2.6	57	80	9	174	40	21	13	25	1.89
72144--72226	37	2.3	37	87	2	114	38	16	15	28	1.90
72352--72392	21	1.9	22	85	5	57	36	26	17	19	1.94
72598--72872	132	2.1	132	82	4	331	42	19	13	24	1.86
72775--72948	76	2.3	76	85	4	228	45	21	12	20	1.83
72621--73109	208	2.3	206	83	5	597	41	21	14	22	1.89
73063--73137	33	2.2	33	85	7	96	42	22	12	22	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73194--73238	18	2.5	18	81	0	63	35	22	6	35	1.80
73223--73269	21	2.2	21	88	0	67	42	23	6	27	1.78

Tables:   1

The End!