Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020281.1 Corchorus olitorius cultivar O-4 contig20314, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5273

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
364--416
27
1.9
27
84
3
70
49
3
0
47
1.19
364--433
25
2.6
27
77
6
72
48
2
1
47
1.25
3286--3392
55
1.9
55
83
7
137
42
23
12
21
1.86
3374--3456
37
2.3
37
89
2
123
38
18
15
27
1.91
3581--3633
21
2.5
21
81
3
61
35
22
18
22
1.95
3794--3887
33
2.8
33
96
3
172
45
11
7
35
1.69
4039--4210
75
2.3
76
85
4
233
45
22
12
19
1.84
4093--4372
132
2.1
132
82
5
334
43
23
12
21
1.86
3885--4342
207
2.2
207
84
5
595
42
22
13
22
1.88
4468--4516
21
2.3
22
82
6
57
40
20
6
32
1.77

Tables:   1

The End!