genome.fa.s20284.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020284.1 Corchorus olitorius cultivar O-4 contig20317, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99762

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102--133	10	3.4	10	87	12	50	50	0	18	31	1.48
6097--6128	14	2.3	15	89	10	50	25	3	21	50	1.64
6487--6561	29	2.5	30	89	4	107	30	17	13	38	1.88
6694--6775	31	2.6	31	92	0	137	47	13	13	25	1.79
6690--6785	31	3.1	30	82	7	129	43	11	13	31	1.79
7345--7383	18	2.2	18	85	0	51	41	0	2	56	1.13
7401--7639	126	1.9	125	84	5	322	35	11	0	52	1.43
7798--7880	31	2.7	31	94	0	139	33	14	9	42	1.78
8043--8107	29	2.2	30	88	5	96	44	13	15	26	1.84
12515--12730	22	10.2	22	68	15	125	32	15	8	43	1.77
12611--12798	22	8.9	22	68	15	85	38	15	7	38	1.77
13074--13314	131	1.8	131	94	0	428	28	21	17	33	1.95
13935--14305	178	2.1	177	82	5	446	36	16	14	32	1.89
14734--14780	20	2.3	20	85	3	58	48	8	21	21	1.76
14806--14908	43	2.4	44	83	1	118	34	7	14	42	1.75
14806--14908	22	4.7	22	75	2	91	34	7	14	42	1.75
17751--17803	12	4.4	13	81	11	60	45	9	5	39	1.60
18986--19068	25	3.2	26	77	14	82	0	27	0	72	0.85
18986--19049	12	5.3	12	81	5	67	0	25	0	75	0.81
19010--19048	6	6.7	6	88	5	62	0	28	0	71	0.86
19009--19057	18	2.8	19	79	17	61	0	26	0	73	0.83
20981--21068	22	4.1	21	77	11	72	39	6	6	46	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21157--21259	46	2.3	44	83	3	125	37	13	13	34	1.84
21136--22251	22	50.3	22	66	13	200	37	18	8	35	1.81
21314--21411	41	2.3	43	81	8	112	37	17	9	35	1.82
21402--21471	23	3.1	23	79	6	72	31	18	2	47	1.63
21380--21471	45	2.0	45	83	8	116	32	17	4	45	1.68
21987--22095	43	2.5	44	86	1	139	31	20	11	37	1.87
22067--22161	49	2.0	48	89	2	145	36	13	8	41	1.75
22166--22262	22	4.4	22	78	10	108	42	20	5	31	1.74
22196--22278	22	3.8	22	87	1	114	40	16	9	32	1.81
23465--23503	14	2.6	14	84	8	51	51	0	17	30	1.46
24220--24278	27	2.2	26	82	8	75	42	1	8	47	1.44
24222--24278	26	2.2	26	84	9	71	42	1	8	47	1.45
24331--24362	6	5.5	6	92	7	57	50	0	15	34	1.45
27841--27873	17	1.9	17	93	0	57	36	18	15	30	1.91
35338--35513	31	5.7	31	84	0	156	32	22	25	19	1.97
35350--35513	62	2.7	62	83	0	195	34	21	24	19	1.97
40720--40796	22	3.5	22	84	8	95	41	9	7	41	1.65
40716--40804	43	2.0	44	86	2	126	40	10	7	41	1.68
43365--43425	27	2.3	26	83	16	72	45	1	8	44	1.43
57760--57910	76	2.0	75	82	6	180	17	29	28	24	1.98
58807--58847	20	2.0	21	85	4	57	21	0	34	43	1.53
59179--59332	79	2.0	77	90	2	245	25	26	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63274--63319	19	2.4	19	100	0	92	34	6	41	17	1.75
63274--63337	19	3.3	19	91	2	65	40	6	37	15	1.73
63305--63352	20	2.4	20	82	0	60	50	4	37	8	1.52
66903--66993	30	3.1	30	82	6	114	39	10	28	20	1.87
67123--67182	31	1.9	31	96	0	111	20	11	25	43	1.85
71725--71808	39	2.1	40	95	2	152	26	21	7	45	1.77
83944--84032	44	2.0	44	97	0	169	29	25	8	35	1.87
85639--85677	21	1.9	20	94	5	69	35	20	33	10	1.86
91978--92021	23	1.9	23	81	9	54	54	0	15	29	1.42
96882--97142	105	2.5	104	86	4	364	40	8	8	42	1.65

Tables:   1

The End!