Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020285.1 Corchorus olitorius cultivar O-4 contig20318, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46227

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
909--1006
29
3.3
28
75
17
83
16
14
27
41
1.87
1141--1230
44
2.0
44
95
0
162
36
30
10
23
1.87
1704--1738
2
17.5
2
100
0
70
48
0
0
51
1.00
6552--6605
20
2.7
20
100
0
108
27
9
22
40
1.84
10966--11009
12
3.4
12
87
9
52
47
0
40
11
1.39
11679--11731
27
2.0
27
92
0
88
9
11
11
67
1.41
11820--11873
26
2.0
27
85
3
74
9
18
11
61
1.55
11593--11993
139
2.9
139
96
0
730
21
14
14
48
1.80
14448--14496
21
2.3
21
96
0
89
22
20
18
38
1.93
17641--17684
2
22.0
2
100
0
88
50
0
0
50
1.00
29200--29230
15
2.1
15
93
0
53
38
25
6
29
1.81
32480--32611
63
2.1
63
98
0
255
13
37
12
37
1.82
35314--35347
2
17.0
2
87
0
50
47
0
2
50
1.16
39412--39449
11
3.5
11
85
10
51
57
2
0
39
1.12
39771--39831
31
2.1
31
84
9
83
32
1
9
55
1.42
40650--40685
5
7.6
5
87
12
58
22
16
0
61
1.35
40643--40685
13
3.2
13
84
12
59
23
18
0
58
1.40
40674--40716
14
3.1
14
86
0
59
27
2
0
69
1.00

Tables:   1

The End!