Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020288.1 Corchorus olitorius cultivar O-4 contig20321, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20164

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1080--1131
27
1.9
27
100
0
104
34
30
3
30
1.76
1076--1142
15
4.7
15
76
10
77
29
29
5
34
1.81
1874--1970
32
3.0
33
81
11
121
31
19
16
31
1.94
8254--8495
124
1.9
129
89
8
386
47
0
11
39
1.45
10311--10400
35
2.6
35
90
0
153
51
10
18
20
1.75
14017--14080
27
2.5
26
85
7
78
37
9
26
26
1.87
14259--14295
15
2.5
15
90
0
56
40
13
27
18
1.88
15885--15921
15
2.5
15
90
0
56
18
27
13
40
1.88
16100--16163
27
2.5
26
85
7
78
26
26
9
37
1.87
19165--19197
6
5.8
6
92
7
52
36
15
0
48
1.45

Tables:   1

The End!