Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020296.1 Corchorus olitorius cultivar O-4 contig20329, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3680
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.31


Found at i:27 original size:16 final size:16

Alignment explanation


    Indices: 8--59  Score: 59
    Period size: 16  Copynumber: 3.2  Consensus size: 16

          1 AAAAGGA

                            
          8 AAAAAAAAGAAAAAAG
          1 AAAAAAAAGAAAAAAG

                   *    *   
         24 AAAAAAAGGAAATAAG
          1 AAAAAAAAGAAAAAAG

               *  *      *  
         40 AAATAAGAGAAAATAG
          1 AAAAAAAAGAAAAAAG

                
         56 AAAA
          1 AAAA

         60 TTATGGATAA


Statistics
Matches: 28,  Mismatches: 8, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
  16   28  1.00

ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06


Consensus pattern (16 bp):   
AAAAAAAAGAAAAAAG

Found at i:2618 original size:21 final size:21

Alignment explanation


    Indices: 2592--2632  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2582 TTAGAAACCC

                                 
       2592 TAGTACCACTTAAATCCAATT
          1 TAGTACCACTTAAATCCAATT

                       **       
       2613 TAGTACCACTTGTATCCAAT
          1 TAGTACCACTTAAATCCAAT

       2633 AGGGTTTTAA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.34, C:0.24, G:0.07, T:0.34


Consensus pattern (21 bp):   
TAGTACCACTTAAATCCAATT
Done.