Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020297.1 Corchorus olitorius cultivar O-4 contig20330, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50636

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1223--1248
4
6.5
4
100
0
52
73
0
26
0
0.84
4270--5486
608
2.0
605
95
1
2179
36
10
21
31
1.87
8621--9092
238
2.0
238
95
0
845
37
17
15
29
1.91
10402--10493
45
2.1
43
90
6
141
38
20
5
35
1.76
11509--11623
3
38.3
3
96
0
212
66
0
0
32
1.04
12594--13884
610
2.1
596
88
6
1898
36
9
21
32
1.86
13334--14201
441
2.0
441
80
5
991
37
11
22
29
1.88
14697--14746
18
2.8
18
87
3
66
84
6
8
2
0.86
14713--14747
18
1.9
18
100
0
70
74
8
11
5
1.22
21015--21618
304
2.0
296
93
2
1037
33
19
9
37
1.83
27689--27717
9
3.0
10
90
10
51
20
0
0
79
0.74
27675--27717
21
2.2
20
87
8
61
16
6
0
76
0.99
27721--27796
6
12.7
6
82
9
77
1
17
0
81
0.76
27714--27764
12
4.3
12
90
2
77
0
21
0
78
0.75
27721--27794
24
2.9
25
86
8
87
1
17
0
81
0.77
27831--27866
18
2.0
18
94
0
63
5
47
38
8
1.57
33634--33684
21
2.4
21
76
0
57
15
7
0
76
1.00
33677--33721
12
3.8
12
90
0
54
2
20
0
77
0.87
33689--33750
6
10.7
6
81
11
76
0
19
0
80
0.71
33682--33721
18
2.2
18
86
0
53
0
22
0
77
0.77
33688--33753
29
2.3
28
82
14
82
0
19
0
80
0.72
33702--33753
23
2.4
22
84
12
72
0
17
0
82
0.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41965--42008
22
2.0
22
86
0
61
11
61
18
9
1.55
46537--46568
5
6.2
5
96
3
55
0
21
0
78
0.76
46655--46723
25
2.8
25
82
4
86
5
47
23
23
1.72
46740--46803
10
6.9
9
75
18
51
0
37
0
62
0.95

Tables:   1

The End!