Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020300.1 Corchorus olitorius cultivar O-4 contig20333, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3628

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1053--1092
21
1.9
21
89
0
62
25
35
22
17
1.95
1125--1187
21
3.0
21
97
0
117
23
36
19
20
1.95
1052--1259
92
2.2
93
87
1
301
30
26
23
20
1.98
2361--2645
57
5.1
56
78
10
239
28
17
6
48
1.71
2705--3223
65
8.3
62
76
13
186
28
15
7
48
1.72
2712--3253
32
17.4
31
77
9
435
28
15
7
48
1.72
2712--3324
157
3.9
155
81
7
607
28
15
7
48
1.72
2729--3324
64
9.4
64
80
8
511
28
15
7
48
1.72
3261--3297
15
2.5
15
91
8
58
21
16
5
56
1.59
3147--3346
67
3.0
66
82
7
214
26
17
6
50
1.70

Tables:   1

The End!