genome.fa.s20302.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020302.1 Corchorus olitorius cultivar O-4 contig20335, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29851

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2343--2474	51	2.6	51	80	2	140	37	17	6	38	1.74
3825--3853	15	1.9	15	100	0	58	24	0	41	34	1.55
8378--8591	112	1.9	111	85	2	295	28	17	6	46	1.73
8321--8591	57	4.8	56	78	13	247	28	17	7	46	1.75
8575--8662	34	2.5	35	85	5	115	23	15	5	54	1.63
8607--9227	32	19.6	31	80	7	560	26	14	8	50	1.71
8625--9234	129	4.8	127	83	4	695	26	14	7	51	1.70
8607--9227	161	3.9	157	81	7	679	26	14	8	50	1.71
10209--10459	51	4.9	51	86	0	306	37	21	5	35	1.78
12586--12660	37	2.0	37	100	0	150	42	16	2	38	1.62
12592--12683	37	2.5	37	89	5	125	50	16	4	29	1.64
13510--14328	54	15.4	54	81	7	847	31	21	18	28	1.97
13510--14328	214	3.8	216	83	6	929	31	21	18	28	1.97
14439--14559	50	2.3	53	80	8	149	32	19	17	30	1.95
14436--14574	50	2.7	53	76	14	144	33	20	15	30	1.94
14186--14660	236	2.0	236	99	0	932	35	18	16	28	1.93
14541--15108	54	10.6	54	86	2	680	37	20	16	26	1.93
16121--16199	37	2.1	39	85	4	108	36	15	13	34	1.87
16378--16423	21	2.2	21	88	7	67	8	19	2	69	1.25
16378--16443	19	3.4	19	80	16	73	7	19	3	69	1.26
16577--16646	27	2.6	27	93	4	115	12	18	28	40	1.88
16577--16667	27	3.4	27	83	8	114	14	20	26	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17956--17989	18	1.9	17	88	5	50	47	11	23	17	1.81
27772--27998	50	4.5	50	93	1	366	38	11	25	24	1.89
28273--28363	27	3.4	27	81	0	110	18	18	24	38	1.93

Tables:   1

The End!