Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020307.1 Corchorus olitorius cultivar O-4 contig20340, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53238

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1609--1651
22
2.0
22
81
9
52
16
9
11
62
1.53
9351--9782
50
8.6
49
79
6
393
42
4
14
38
1.65
9335--9783
151
3.0
150
90
3
704
42
4
14
38
1.65
10375--11060
48
14.2
48
86
2
921
13
18
21
46
1.83
11035--11080
20
2.3
20
92
0
74
15
15
8
60
1.57
10891--11194
163
1.9
164
88
2
459
13
19
20
47
1.82
10987--11127
67
2.1
68
89
4
214
12
16
18
52
1.74
11055--11194
48
2.9
48
85
7
178
12
21
20
45
1.85
10943--11168
115
2.0
116
90
2
357
13
18
19
48
1.80
14143--14172
15
1.9
16
93
6
53
10
13
6
70
1.34
19844--19948
25
4.1
25
86
3
129
50
8
22
18
1.73
20477--20570
28
3.4
28
85
2
129
38
27
17
17
1.91
21012--21104
36
2.6
34
81
11
98
32
23
13
30
1.94
32938--32964
9
3.0
9
100
0
54
77
22
0
0
0.76
37107--37149
12
3.5
12
76
17
52
53
9
23
13
1.69
37116--37207
13
7.2
13
68
16
57
52
9
20
17
1.73
37107--37207
25
4.0
25
85
2
130
52
9
20
16
1.72
37737--37830
28
3.4
28
85
2
120
38
26
17
18
1.92
46383--46415
15
2.1
17
88
11
52
9
15
36
39
1.79
48649--48789
49
2.9
47
84
7
167
26
15
6
51
1.67
50527--50562
16
2.2
16
90
0
54
8
8
38
44
1.65
50594--50630
17
2.2
17
90
4
58
5
8
43
43
1.57

Tables:   1

The End!