Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020310.1 Corchorus olitorius cultivar O-4 contig20343, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50174

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2834--2866
17
1.9
17
93
0
57
15
3
6
75
1.11
3909--3963
27
2.1
27
86
10
78
30
0
25
43
1.55
7554--7633
38
2.1
38
88
0
115
37
15
17
30
1.90
12147--12177
2
15.5
2
100
0
62
51
0
0
48
1.00
12369--12408
21
2.0
20
85
5
53
37
12
20
30
1.89
13009--13103
47
2.0
47
100
0
190
45
18
4
31
1.69
14587--14667
34
2.4
35
85
8
114
30
9
9
49
1.69
14693--14732
22
1.9
22
85
10
57
42
10
12
35
1.76
27699--27794
33
2.8
35
84
7
133
23
18
6
51
1.69
30027--30137
47
2.3
47
85
10
138
39
19
22
18
1.92
30248--30895
69
9.3
69
89
6
898
26
17
29
25
1.97
30857--31144
50
5.8
50
94
0
477
29
14
27
28
1.95
32438--32469
6
5.7
6
92
7
50
15
0
15
68
1.21
32469--32511
19
2.3
19
80
8
52
6
9
2
81
0.95
36548--36574
9
3.0
9
100
0
54
77
22
0
0
0.76
37116--37211
33
2.8
35
81
10
117
23
18
6
51
1.69
39736--39787
26
2.0
26
96
0
95
9
30
15
44
1.78
45942--45977
19
1.9
18
88
5
54
25
22
11
41
1.86

Tables:   1

The End!