Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020316.1 Corchorus olitorius cultivar O-4 contig20349, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83059

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2012--2174
33
4.9
33
75
4
116
42
20
8
28
1.82
2060--2186
66
1.9
66
85
0
173
42
21
8
27
1.82
5379--5421
22
2.0
22
85
0
59
23
23
30
23
1.99
5451--5492
21
2.0
21
95
0
75
19
16
38
26
1.92
5379--5563
71
2.6
71
89
0
280
20
21
27
31
1.98
5525--5564
21
1.9
21
94
0
71
15
22
37
25
1.93
5611--5660
21
2.4
21
76
6
57
32
22
8
38
1.83
8649--8682
17
2.0
17
88
0
50
79
0
17
2
0.86
9485--9538
23
2.3
25
78
18
62
3
11
12
72
1.25
11940--11967
14
2.0
14
100
0
56
92
7
0
0
0.37
11942--11966
13
1.9
13
100
0
50
96
4
0
0
0.24
11941--12009
16
4.3
16
75
0
66
82
14
2
0
0.78
13672--13798
67
1.9
67
90
0
200
24
29
17
29
1.97
13754--13942
105
1.8
105
82
2
245
27
25
15
31
1.96
15276--15315
15
2.6
16
88
4
55
62
12
10
15
1.54
19580--19619
15
2.6
16
88
4
55
12
12
10
65
1.49
20028--20094
27
2.4
27
83
16
75
47
5
16
29
1.70
20258--20289
14
2.3
14
94
0
55
6
3
12
78
1.06
24324--24350
10
2.7
10
100
0
54
33
37
0
29
1.58
25058--25090
16
2.1
16
94
5
59
15
6
12
66
1.42
28892--28941
24
2.1
24
89
10
77
28
14
10
48
1.75
28922--29028
28
3.7
27
72
17
74
42
18
4
34
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29362--29401
15
2.6
16
88
4
55
62
12
10
15
1.54
31881--31906
12
2.2
12
100
0
52
7
23
7
61
1.49
35269--35310
21
2.0
21
90
0
66
21
0
2
76
0.90
37975--38454
237
2.0
237
94
0
836
33
16
27
22
1.96
38504--39460
478
2.0
484
86
5
1357
24
16
16
41
1.89
40884--40934
17
3.1
16
78
10
59
3
15
0
80
0.86
41602--41645
23
1.9
23
95
0
79
29
6
22
40
1.80
47437--47506
30
2.4
30
85
2
88
15
27
11
45
1.80
47630--47769
31
4.7
29
90
2
136
38
20
27
14
1.91
47683--47792
31
3.5
31
100
0
220
36
23
27
12
1.91
54673--54721
24
2.0
26
88
8
75
20
6
6
67
1.35
55607--55821
75
2.9
76
78
4
204
38
17
13
30
1.89
63167--63193
6
4.5
6
100
0
54
85
0
0
14
0.61
70078--70119
21
2.0
21
90
0
66
38
4
19
38
1.73

Tables:   1

The End!