Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020318.1 Corchorus olitorius cultivar O-4 contig20351, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3289
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31


Found at i:2904 original size:30 final size:30

Alignment explanation


    Indices: 2870--2931  Score: 124
    Period size: 30  Copynumber: 2.1  Consensus size: 30

       2860 GATTAGCTAC

                                          
       2870 AATACCGAAATGCTAATCTATGAGCCAACA
          1 AATACCGAAATGCTAATCTATGAGCCAACA

                                          
       2900 AATACCGAAATGCTAATCTATGAGCCAACA
          1 AATACCGAAATGCTAATCTATGAGCCAACA

              
       2930 AA
          1 AA

       2932 CCCCTTCCCC


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   32  1.00

ACGTcount: A:0.45, C:0.23, G:0.13, T:0.19


Consensus pattern (30 bp):   
AATACCGAAATGCTAATCTATGAGCCAACA

Found at i:3086 original size:20 final size:20

Alignment explanation


    Indices: 3061--3100  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       3051 AATTACAAAC

                                
       3061 AAACTCACATTCCGTGAGAG
          1 AAACTCACATTCCGTGAGAG

                                
       3081 AAACTCACATTCCGTGAGAG
          1 AAACTCACATTCCGTGAGAG

       3101 TTGAACCTAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.35, C:0.25, G:0.20, T:0.20


Consensus pattern (20 bp):   
AAACTCACATTCCGTGAGAG
Done.