Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020319.1 Corchorus olitorius cultivar O-4 contig20352, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28864

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1081--1317
22
10.6
22
74
6
145
38
16
12
32
1.86
1103--1692
22
26.4
22
66
13
118
35
15
10
37
1.83
1571--1694
44
2.8
43
82
4
149
33
13
12
40
1.83
2904--3305
171
2.4
166
76
8
380
31
17
18
32
1.94
2903--3261
171
2.1
166
79
7
384
31
16
18
32
1.94
3393--3636
22
11.1
21
70
11
116
38
17
12
31
1.86
3393--3619
44
5.2
43
73
11
131
39
16
12
32
1.85
3752--3875
22
5.6
22
75
11
110
33
13
11
41
1.80
3420--3875
44
10.1
44
69
13
169
34
18
11
35
1.87
5591--5648
26
2.3
26
88
8
84
56
0
17
25
1.40
22761--22799
16
2.4
16
80
16
53
74
0
10
15
1.07
24592--24707
57
2.0
57
94
0
205
41
1
23
33
1.65
25966--26183
109
2.0
109
94
0
382
31
11
14
43
1.80
27618--27764
61
2.4
61
82
4
163
43
15
18
22
1.87

Tables:   1

The End!