Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020321.1 Corchorus olitorius cultivar O-4 contig20354, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2929
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31


Found at i:1403 original size:128 final size:128

Alignment explanation


    Indices: 1175--1429  Score: 492
    Period size: 128  Copynumber: 2.0  Consensus size: 128

       1165 CCTTCTTATT

                                                                             
       1175 TATAATTAAAGTGACTATTATTAAATTCCTAACATGGTTCCCAACTTAATTCTTAGGACTAAAAA
          1 TATAATTAAAGTGACTATTATTAAATTCCTAACATGGTTCCCAACTTAATTCTTAGGACTAAAAA

                                                    *  *                   
       1240 TATATCACCTGCAGCGAAGCGCAGGCAGTGCTACCTTGTTGTTGTTATTATTATAATATATAA
         66 TATATCACCTGCAGCGAAGCGCAGGCAGTGCTACCTTGTTATTATTATTATTATAATATATAA

                                                                             
       1303 TATAATTAAAGTGACTATTATTAAATTCCTAACATGGTTCCCAACTTAATTCTTAGGACTAAAAA
          1 TATAATTAAAGTGACTATTATTAAATTCCTAACATGGTTCCCAACTTAATTCTTAGGACTAAAAA

                                                                          
       1368 TATATCACCTGCAGCGAAGCGCAGGCAGTGCTACCTTGTTATTATTATTATTATAATATATA
         66 TATATCACCTGCAGCGAAGCGCAGGCAGTGCTACCTTGTTATTATTATTATTATAATATATA

       1430 GTAGTAAGAT


Statistics
Matches: 125,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 128  125  1.00

ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35


Consensus pattern (128 bp):   
TATAATTAAAGTGACTATTATTAAATTCCTAACATGGTTCCCAACTTAATTCTTAGGACTAAAAA
TATATCACCTGCAGCGAAGCGCAGGCAGTGCTACCTTGTTATTATTATTATTATAATATATAA
Done.