genome.fa.s20322.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020322.1 Corchorus olitorius cultivar O-4 contig20355, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68359

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1128--1196	22	3.2	21	78	13	77	34	17	7	40	1.77
2093--2260	91	1.8	91	90	0	273	40	13	16	29	1.87
2130--2260	31	4.3	31	77	11	144	39	15	16	28	1.89
2305--2407	31	3.4	31	67	15	97	24	20	20	34	1.96
10471--10558	41	2.1	41	87	4	124	39	22	10	27	1.86
12819--12908	38	2.3	39	88	5	130	55	6	13	24	1.62
28165--28190	2	13.0	2	100	0	52	50	0	50	0	1.00
31007--31040	13	2.6	13	90	9	52	0	8	0	91	0.43
31288--31329	19	2.3	19	80	15	52	30	21	0	47	1.51
31901--31987	45	1.9	45	83	4	113	24	13	42	19	1.87
45089--45125	19	1.9	19	88	0	56	18	18	21	40	1.91
45810--45863	27	2.0	28	82	7	67	38	22	7	31	1.82
49396--49433	18	2.1	18	95	0	67	39	0	7	52	1.31
50646--50671	6	4.3	6	100	0	52	15	0	0	84	0.62
56378--56422	16	2.8	16	100	0	90	75	6	0	17	1.01
59483--59544	32	1.9	32	96	0	115	46	0	11	41	1.39
59706--59881	86	2.1	86	91	3	284	51	3	9	36	1.51
60129--60682	22	25.3	22	68	12	115	35	16	9	38	1.82
60217--60672	44	10.4	45	70	11	164	35	16	9	37	1.82
60791--60959	22	7.7	22	75	7	121	33	13	10	43	1.77
60791--60959	44	3.9	43	77	11	155	33	13	10	43	1.77
60790--60985	22	8.8	22	72	10	96	32	13	10	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61045--61376	22	15.5	21	67	16	105	35	18	9	36	1.84
61223--61376	66	2.3	67	85	6	197	34	19	11	35	1.87
61580--61618	20	2.0	20	85	10	53	64	2	5	28	1.28
67674--67703	12	2.4	13	94	5	53	66	10	6	16	1.41

Tables:   1

The End!