Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020331.1 Corchorus olitorius cultivar O-4 contig20364, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6237
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34


Found at i:2244 original size:18 final size:19

Alignment explanation


    Indices: 2216--2255  Score: 64
    Period size: 18  Copynumber: 2.2  Consensus size: 19

       2206 ATTTTTGCAA

                               
       2216 TCATATGTCAGCATTTGGT
          1 TCATATGTCAGCATTTGGT

                       *       
       2235 TCAT-TGTCAGGATTTGGT
          1 TCATATGTCAGCATTTGGT

               
       2253 TCA
          1 TCA

       2256 AACGTTTGAG


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  18   16  0.80
  19    4  0.20

ACGTcount: A:0.20, C:0.15, G:0.23, T:0.42


Consensus pattern (19 bp):   
TCATATGTCAGCATTTGGT
Done.