Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020334.1 Corchorus olitorius cultivar O-4 contig20367, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52619

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3488--3532
15
3.1
15
82
17
60
0
22
0
77
0.76
7318--7418
42
2.4
42
98
0
193
31
2
13
51
1.56
10291--10315
13
1.9
13
100
0
50
84
0
0
16
0.63
16065--16224
84
1.9
85
92
3
270
35
16
13
33
1.89
18849--18902
23
2.4
22
81
12
56
37
1
3
57
1.27
24146--24212
33
2.0
33
82
5
82
29
10
28
31
1.90
27389--27539
76
2.0
77
89
3
234
34
11
11
41
1.79
27950--27998
4
12.2
4
100
0
98
75
0
0
24
0.80
34283--34334
19
2.7
18
77
11
50
48
1
0
50
1.12
34685--34710
13
2.0
13
100
0
52
53
30
0
15
1.42
35721--35753
10
3.3
10
88
12
50
48
6
0
45
1.27
44933--45271
179
1.9
178
87
4
495
35
15
14
34
1.89
44932--45320
179
2.2
179
82
4
491
36
15
14
33
1.88
46516--46543
10
2.8
10
100
0
56
7
50
0
42
1.30
48235--48514
155
1.8
152
83
4
368
37
8
14
39
1.77
48511--48542
15
2.1
15
100
0
64
34
12
6
46
1.67
48288--48616
164
2.1
155
82
5
388
38
10
13
37
1.79
50089--50124
15
2.4
15
85
0
54
50
13
8
27
1.71
51263--51406
76
1.9
76
88
0
216
23
11
15
48
1.78
51422--51494
33
2.2
34
87
7
114
45
8
16
30
1.76

Tables:   1

The End!