Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020340.1 Corchorus olitorius cultivar O-4 contig20373, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20869

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11--50
5
8.0
5
88
0
62
77
0
20
2
0.88
114--160
15
3.2
15
78
6
60
51
12
8
27
1.69
109--174
13
4.7
13
75
20
53
43
13
9
33
1.76
822--883
8
7.4
8
74
15
54
80
1
16
1
0.87
1806--2008
37
5.4
37
73
11
155
24
16
14
44
1.85
1820--2024
74
2.7
75
81
3
261
24
16
14
44
1.85
2027--2546
54
9.7
54
84
4
585
27
17
21
33
1.96
2028--2447
162
2.6
162
90
1
655
28
17
21
32
1.96
2567--2715
47
3.0
47
81
10
163
29
15
20
34
1.93
2614--2731
54
2.2
55
85
1
157
30
17
19
32
1.95
2974--3077
7
14.9
7
87
0
91
53
17
4
24
1.62
3065--3110
23
2.0
23
95
0
83
36
26
2
34
1.69
3124--3157
7
4.9
7
92
0
50
61
14
5
17
1.52
3138--3225
33
2.6
33
78
8
97
44
18
5
31
1.73
8814--8865
27
1.9
27
84
7
70
48
11
9
30
1.72
10235--10259
2
12.5
2
100
0
50
52
0
0
48
1.00
10792--10838
21
2.2
21
85
7
60
8
14
23
53
1.69
15482--15663
92
2.0
92
94
0
319
23
16
20
39
1.92
18136--18273
69
2.0
69
97
0
258
12
14
23
50
1.76
18560--19037
76
6.1
76
90
4
659
20
26
15
38
1.91
18736--18992
84
3.1
84
97
0
478
21
28
14
35
1.93
18560--19037
160
3.0
152
86
7
677
20
26
15
38
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19088--19298
40
4.9
40
77
13
190
25
14
12
47
1.80
19028--19298
133
2.1
130
86
5
377
25
14
13
46
1.82
19131--19305
90
1.9
90
92
0
296
27
16
13
42
1.85

Tables:   1

The End!