genome.fa.s20342.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020342.1 Corchorus olitorius cultivar O-4 contig20375, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  176117

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6--71	2	33.0	2	100	0	132	0	50	0	50	1.00
10959--11267	132	2.3	132	85	3	390	30	17	15	36	1.91
16967--16992	12	2.2	12	100	0	52	46	0	7	46	1.31
17272--17453	93	2.0	93	92	0	301	51	1	13	34	1.49
29040--29151	54	2.1	54	100	0	224	29	22	13	34	1.92
36795--37026	35	6.6	35	90	0	311	18	10	28	42	1.83
39110--39134	13	1.9	13	100	0	50	16	8	28	48	1.74
38641--40232	828	1.9	831	89	2	2504	21	21	17	40	1.92
41136--41341	113	1.8	114	90	2	333	36	7	17	37	1.78
44317--44363	23	2.0	23	100	0	94	34	25	4	36	1.76
53717--53797	30	2.5	33	76	17	98	44	4	1	49	1.32
53739--53804	30	2.2	29	81	10	71	50	4	0	45	1.22
56853--56877	11	2.3	11	100	0	50	76	0	0	24	0.80
62380--62541	83	2.0	83	98	0	315	30	14	14	39	1.87
62580--63141	30	18.5	30	86	2	694	29	19	20	30	1.97
76907--76932	13	2.0	13	100	0	52	23	38	7	30	1.83
80824--81073	131	1.9	130	88	4	378	50	2	10	36	1.50
81580--81615	19	1.9	18	94	5	63	58	0	0	41	0.98
90839--90871	15	2.2	15	89	10	50	78	0	21	0	0.75
100875--100922	11	4.7	11	78	21	52	33	20	6	39	1.78
101048--101081	18	1.9	18	88	5	52	50	14	2	32	1.58
108041--108067	7	3.9	7	100	0	54	0	74	0	25	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109447--109497	16	3.2	16	66	5	50	17	7	11	62	1.51
109436--109498	31	2.0	31	100	0	126	20	9	12	57	1.63
116695--116735	5	8.0	5	83	5	55	0	21	0	78	0.76
116696--116743	15	3.2	16	82	11	57	0	25	0	75	0.81
116708--116744	10	3.7	10	92	0	56	0	27	0	72	0.84
117592--117646	28	1.9	29	88	3	85	34	12	12	40	1.82
117533--117694	78	2.1	77	94	1	279	40	12	13	32	1.83
118340--118369	13	2.3	13	94	0	51	30	3	0	66	1.07
118430--118478	22	2.3	21	83	10	64	46	0	2	51	1.12
118878--119014	45	3.0	46	94	2	249	58	8	3	29	1.45
120120--120177	14	4.8	13	76	21	56	41	1	1	55	1.20
120117--120161	14	3.4	14	84	12	58	44	2	2	51	1.26
120122--120184	14	4.3	15	75	13	51	42	1	1	53	1.19
120125--120186	19	3.4	18	74	12	65	41	1	1	54	1.19
120118--120193	21	3.3	23	77	22	81	43	1	1	53	1.17
127494--127520	4	6.8	4	100	0	54	0	22	0	77	0.76
136685--136729	13	3.2	13	81	12	54	17	8	28	44	1.79
137211--137263	10	5.6	9	79	18	54	77	0	18	3	0.92
137210--137253	5	8.8	5	85	14	56	79	0	15	4	0.89
137210--137261	25	2.1	24	86	10	70	78	0	17	3	0.89
151795--151829	4	8.5	4	90	3	52	0	0	25	74	0.82
152613--152774	60	2.7	60	87	8	258	34	20	19	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152877--152977	31	3.4	31	66	18	86	26	19	17	35	1.95
152813--152975	60	2.7	60	89	0	256	26	19	19	34	1.96
153099--153141	4	11.2	4	85	9	63	48	0	20	30	1.50
153099--153134	18	2.0	18	94	0	63	50	0	19	30	1.48
169054--169096	21	2.0	21	82	8	52	4	48	2	44	1.36
172061--172104	5	8.8	5	94	0	79	79	2	18	0	0.83
173146--173191	23	2.0	23	86	0	65	34	10	15	39	1.82

Tables:   1

The End!