Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020343.1 Corchorus olitorius cultivar O-4 contig20376, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6326
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34


Found at i:4631 original size:45 final size:45

Alignment explanation


    Indices: 4580--4676  Score: 124
    Period size: 45  Copynumber: 2.2  Consensus size: 45

       4570 AGCAACAATT

                             *        **   *         *   
       4580 AATATTAGATTTATTTTGATGAATTATTTAGTGATGGAGGAGTAG
          1 AATATTAGATTTATTTTAATGAATTACCTAGAGATGGAGGACTAG

                    *                              *     
       4625 AATATTAGCTTTATTTTAATGAATTACCTAGAGATGGAGTACTAG
          1 AATATTAGATTTATTTTAATGAATTACCTAGAGATGGAGGACTAG

                    
       4670 AAT-TTAG
          1 AATATTAG

       4677 GTAATACACT


Statistics
Matches: 45,  Mismatches: 7, Indels: 1
        0.85            0.13        0.02

Matches are distributed among these distances:
  44    4  0.09
  45   41  0.91

ACGTcount: A:0.35, C:0.04, G:0.21, T:0.40


Consensus pattern (45 bp):   
AATATTAGATTTATTTTAATGAATTACCTAGAGATGGAGGACTAG
Done.