Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020344.1 Corchorus olitorius cultivar O-4 contig20377, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66812

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1759--1796
11
3.5
11
85
10
51
57
2
0
39
1.12
3111--3193
42
2.0
42
95
0
148
33
27
2
36
1.70
7059--7187
49
2.7
48
86
7
172
25
15
5
53
1.63
9143--9184
15
2.7
15
83
16
59
9
14
35
40
1.78
9143--9197
16
3.4
16
80
14
60
7
16
36
40
1.76
10788--10857
16
4.4
16
80
7
88
7
14
38
40
1.73
10793--10904
58
1.9
57
80
5
127
8
11
40
40
1.71
11099--11151
13
4.3
12
84
13
56
30
1
7
60
1.35
11110--11151
13
3.3
13
87
12
61
33
2
7
57
1.39
15996--16024
2
14.5
2
100
0
58
51
0
0
48
1.00
16798--17053
129
2.0
129
99
0
503
30
19
17
31
1.95
20307--20344
17
2.2
18
85
4
51
21
0
7
71
1.11
20535--20595
20
3.4
18
82
11
63
3
1
16
78
0.96
20535--20595
6
10.2
6
76
13
63
3
1
16
78
0.96
20535--20595
26
2.2
28
85
5
81
3
1
16
78
0.96
20566--20594
8
3.8
8
95
4
51
0
0
20
79
0.74
24319--24347
14
2.1
14
100
0
58
65
0
34
0
0.93
25742--25783
21
2.0
21
100
0
84
28
14
9
47
1.75
30388--30413
2
13.0
2
100
0
52
50
0
50
0
1.00
32133--32207
28
2.5
30
85
8
91
26
5
28
40
1.78
35571--35678
30
3.6
30
81
2
119
16
28
19
35
1.94
37736--37824
46
1.9
46
81
4
108
33
12
11
42
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38258--38303
17
2.7
17
89
0
65
32
21
21
23
1.98
38375--38425
17
3.1
16
77
8
57
33
19
23
23
1.97
38228--38471
119
2.0
120
91
0
391
28
20
26
25
1.99
38460--38665
110
1.9
110
91
0
340
33
26
21
17
1.96
39408--39449
20
2.2
20
91
4
68
23
2
14
59
1.47
44656--44714
29
2.0
29
96
0
109
32
8
16
42
1.79
66016--66079
26
2.4
28
82
10
80
28
40
15
15
1.88

Tables:   1

The End!