Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020345.1 Corchorus olitorius cultivar O-4 contig20378, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45815

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--28
2
14.0
2
100
0
56
50
0
0
50
1.00
655--747
41
2.3
41
92
0
150
36
1
16
46
1.54
678--750
15
5.1
15
71
18
57
32
1
15
50
1.52
1669--2380
355
2.0
355
95
0
1280
28
19
14
38
1.90
4034--4061
2
14.0
2
100
0
56
50
0
0
50
1.00
8712--8977
132
2.0
133
85
7
364
39
10
1
49
1.44
10341--10380
19
2.0
21
90
9
66
15
10
7
67
1.41
11226--11258
16
1.9
18
88
11
52
18
9
9
63
1.49
12246--12330
30
2.8
30
80
0
89
12
30
20
36
1.90
13762--13793
15
2.1
15
100
0
64
28
18
15
37
1.92
15174--15232
29
2.0
29
100
0
118
16
6
44
32
1.74
15183--15585
201
2.0
201
100
0
806
31
11
29
27
1.92
15616--15686
34
2.1
34
100
0
142
32
14
14
39
1.85
19383--19435
24
2.2
24
89
0
88
32
0
16
50
1.46
19407--19484
41
1.9
41
100
0
156
34
0
19
46
1.50
20690--20753
32
2.0
32
96
0
119
35
40
7
15
1.76
28958--28988
2
15.5
2
100
0
62
51
0
0
48
1.00
34673--34739
18
3.6
19
80
9
77
32
1
0
65
1.02
34674--34736
7
8.7
7
71
25
51
31
1
0
66
1.01
34667--34740
25
3.1
25
70
16
68
35
1
0
63
1.03
36647--36671
13
1.9
13
100
0
50
56
0
0
44
0.99
37569--37649
29
2.8
29
86
5
110
49
16
9
24
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37877--37932
19
2.9
19
94
0
94
16
33
14
35
1.88
37983--38040
19
2.9
19
82
5
71
29
20
12
37
1.89
39234--39276
21
2.0
21
86
0
59
20
11
23
44
1.84
44782--44828
2
25.0
2
79
12
55
55
2
0
42
1.12
45334--45373
13
3.2
13
80
19
50
37
0
0
62
0.95
45544--45585
22
1.9
22
95
0
75
40
16
16
26
1.90

Tables:   1

The End!