Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020346.1 Corchorus olitorius cultivar O-4 contig20379, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30257

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--34
2
16.5
2
100
0
66
51
0
0
48
1.00
357--393
2
19.0
2
94
5
67
51
0
0
48
1.00
4913--5112
65
3.0
65
77
5
215
33
19
9
38
1.84
8032--8089
24
2.4
24
100
0
116
27
34
8
29
1.87
10361--10387
12
2.2
12
100
0
54
33
14
0
51
1.43
20817--20841
13
1.9
13
100
0
50
8
16
28
48
1.74
21608--21658
17
3.1
16
80
8
57
21
17
21
39
1.93
22095--22144
7
7.0
7
86
4
73
32
26
0
42
1.56
22095--22143
22
2.3
21
89
3
71
32
26
0
40
1.56
22131--22181
21
2.4
22
75
15
54
31
25
0
43
1.55
22706--23001
144
2.0
145
95
4
531
32
14
17
35
1.90
26360--26446
31
2.8
31
82
5
88
33
8
27
31
1.86
26391--26455
29
2.2
31
80
5
80
32
10
29
27
1.90
28668--28713
13
3.3
13
82
11
56
17
10
28
43
1.82
29962--30013
27
1.9
26
88
4
68
21
13
13
51
1.74
29862--30122
143
1.8
141
92
3
443
37
9
5
48
1.58
29989--30212
115
1.9
114
90
3
360
37
10
3
48
1.55
30184--30231
15
2.9
16
84
12
53
41
4
2
52
1.32
30181--30231
18
2.8
17
85
8
57
41
3
1
52
1.31

Tables:   1

The End!